X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293.15100 mM Sodium acetate pH 4.5 and 2.0 M ammonium sulfate
Crystal Properties
Matthews coefficientSolvent content
3.362.77

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.3α = 90
b = 92.29β = 90
c = 98.76γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2018-07-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1646.1599.40.99919.46.471395
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.161.1891.80.9462.52.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2FRS1.1646.14571394345999.3210.1630.16240.173718.576
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0061.239-1.233
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.697
r_dihedral_angle_4_deg20.387
r_dihedral_angle_3_deg11.06
r_dihedral_angle_1_deg7.464
r_scangle_it3.445
r_lrange_it2.956
r_scangle_other2.892
r_lrange_other2.832
r_scbond_it2.692
r_scbond_other2.432
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.697
r_dihedral_angle_4_deg20.387
r_dihedral_angle_3_deg11.06
r_dihedral_angle_1_deg7.464
r_scangle_it3.445
r_lrange_it2.956
r_scangle_other2.892
r_lrange_other2.832
r_scbond_it2.692
r_scbond_other2.432
r_rigid_bond_restr2.225
r_angle_refined_deg1.72
r_mcangle_other1.687
r_mcangle_it1.685
r_angle_other_deg1.516
r_mcbond_it1.411
r_mcbond_other1.405
r_symmetry_nbd_refined0.285
r_nbd_refined0.203
r_nbd_other0.202
r_xyhbond_nbd_refined0.201
r_symmetry_nbd_other0.185
r_nbtor_refined0.169
r_symmetry_xyhbond_nbd_refined0.123
r_chiral_restr0.096
r_symmetry_nbtor_other0.081
r_bond_refined_d0.013
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1124
Nucleic Acid Atoms
Solvent Atoms157
Heterogen Atoms24

Software

Software
Software NamePurpose
XDSdata reduction
xia2data reduction
Aimlessdata scaling
MolProbitymodel building
Cootmodel building
PHASERphasing
REFMACrefinement