7OVC

Structure of the human UFC1 protein in complex with the UBA5 C-terminal UFC1-binding motif.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D [15N,1H]-TROSY-(H)C(CC)(CO)NH-TOCSY1.0 mM [U-100% 13C; U-100% 15N] Ubiquitin-fold modifier-conjugating enzyme 1, 1.0 mM Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE III HD 700
23D [15N,1H]-TROSY-H(C)(CC)(CO)NH-TOCSY1.0 mM [U-100% 13C; U-100% 15N] Ubiquitin-fold modifier-conjugating enzyme 1, 1.0 mM Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE III HD 700
33D BEST-[15N,1H]-TROSY-HNCACB1.0 mM [U-100% 13C; U-100% 15N] Ubiquitin-fold modifier-conjugating enzyme 1, 1.0 mM Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE III 950
43D F1-13C/15N-filtered NOESY-[13C,1H]-HSQC1.0 mM [U-100% 13C; U-100% 15N] Ubiquitin-fold modifier-conjugating enzyme 1, 1.0 mM Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE III 950
53D F1-13C/15N-filtered NOESY-[15N,1H]-SOFAST-HMQC1.0 mM [U-100% 13C; U-100% 15N] Ubiquitin-fold modifier-conjugating enzyme 1, 1.0 mM Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE III 950
63D F1-13C/15N-filtered NOESY-[13C,1H]-SOFAST-HMQC (aro)1.0 mM [U-100% 13C; U-100% 15N] Ubiquitin-fold modifier-conjugating enzyme 1, 1.0 mM Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE III 950
73D NOESY-[13C,1H]-SOFAST-HMQC (aro)1.0 mM [U-100% 13C; U-100% 15N] Ubiquitin-fold modifier-conjugating enzyme 1, 1.0 mM Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE III 950
83D NOESY-[13C,1H]-HSQC (aliphatic region)1.0 mM [U-100% 13C; U-100% 15N] Ubiquitin-fold modifier-conjugating enzyme 1, 1.0 mM Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE III 950
93D NOESY-BEST-[15N,1H]-TROSY1.0 mM [U-100% 13C; U-100% 15N] Ubiquitin-fold modifier-conjugating enzyme 1, 1.0 mM Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE III 950
103D BEST-[15N,1H]-TROSY-HNCA1.2 mM Ubiquitin-fold modifier-conjugating enzyme 1, 0.3 mM [U-100% 13C; U-100% 15N] Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE III 950
113D BEST-[15N,1H]-TROSY-HNCACB1.2 mM Ubiquitin-fold modifier-conjugating enzyme 1, 0.3 mM [U-100% 13C; U-100% 15N] Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE III 950
123D F1-13C/15N-filtered NOESY-[13C,1H]-HSQC1.2 mM Ubiquitin-fold modifier-conjugating enzyme 1, 0.3 mM [U-100% 13C; U-100% 15N] Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE III 950
133D [15N,1H]-TROSY-(H)C(CC)(CO)NH-TOCSY1.2 mM Ubiquitin-fold modifier-conjugating enzyme 1, 0.3 mM [U-100% 13C; U-100% 15N] Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE III HD 700
143D NOESY [13C,1H]-HSQC1.2 mM Ubiquitin-fold modifier-conjugating enzyme 1, 0.3 mM [U-100% 13C; U-100% 15N] Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE NEO 900
153D [15N,1H]-TROSY-H(CC)(CO)NH-TOCSY1.2 mM Ubiquitin-fold modifier-conjugating enzyme 1, 0.3 mM [U-100% 13C; U-100% 15N] Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE II 600
163D NOESY-[15N,1H]-SOFAST-HMQC1.2 mM Ubiquitin-fold modifier-conjugating enzyme 1, 0.3 mM [U-100% 13C; U-100% 15N] Ubiquitin-like modifier-activating enzyme 5, 50 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 5 mM AEBSF protease inhibitor, 0.15 mM DSS95% H2O/5% D2O100 mM7.5AMBIENT atm298Bruker AVANCE III HD 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
5BrukerAVANCE II600
1BrukerAVANCE III HD700
2BrukerAVANCE III HD800
3BrukerAVANCE NEO900
4BrukerAVANCE III950
NMR Refinement
MethodDetailsSoftware
molecular dynamicsOPALp
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.6.2Bruker Biospin
2chemical shift assignmentSparky3.114Goddard
3structure calculationCYANA3.98Guntert, Mumenthaler and Wuthrich
4refinementOPALp1.4Koradi, R., Billeter, M. and Guentert, P
5peak pickingSparky3.114Goddard