7NW1

Crystal structure of UFC1 in complex with UBA5

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	35 mM citric acid, 65 mM bis-tris propane, 19% PEG3350, 100 mM lithium chloride

Crystal Properties
Matthews coefficient	Solvent content
2.13	42.34

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 47.204	α = 90
b = 67.421	β = 90
c = 133.984	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	298	PIXEL	DECTRIS PILATUS 6M-F		2018-04-12	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-1	0.9720	ESRF	ID23-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.95	33.71	46.5	0.132	0.999	11.7	8.3		15162			49.5

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.95	2.05	3		1.87	0.478		6.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	NONE	2Z6O	1.95	23.761	15105	814	47.144	0.219	0.2185	0.2146	0.2801	Random selection	59.743

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.059			0.502		-0.562

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.06
r_dihedral_angle_3_deg	20.332
r_dihedral_angle_4_deg	20.26
r_lrange_it	12.708
r_scangle_it	9.175
r_mcangle_it	7.197
r_dihedral_angle_1_deg	6.308
r_scbond_it	6.059
r_mcbond_it	4.702
r_angle_refined_deg	1.555
r_nbtor_refined	0.311
r_symmetry_nbd_refined	0.225
r_nbd_refined	0.212
r_xyhbond_nbd_refined	0.125
r_symmetry_xyhbond_nbd_refined	0.117
r_ncsr_local_group_2	0.117
r_chiral_restr	0.112
r_ncsr_local_group_1	0.107
r_bond_refined_d	0.007
r_gen_planes_refined	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2902
Nucleic Acid Atoms
Solvent Atoms	51
Heterogen Atoms	98

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing