☰ Navigation Tabs
Gag:02 TCR in complex with HLA-E.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5W1W 5W1W, 5EU6 experimental model PDB 5EU6 5W1W, 5EU6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 23.2% (w/v) PEG 1500, 93 mM MMT pH 9.0
Crystal Properties Matthews coefficient Solvent content 3.07 59.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.391 α = 90 b = 89.391 β = 90 c = 293.298 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2020-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 85.354 100 0.207 0.041 1 11.6 26.3 39941
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.59 6.926 1.343 0.735 0.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5W1W, 5EU6 2.551 76.445 39837 1945 99.97 0.242 0.2397 0.2457 0.2963 0.2957 90.49
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.47 0.47 -0.941
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.261 r_dihedral_angle_3_deg 21.008 r_dihedral_angle_4_deg 19.78 r_dihedral_angle_1_deg 8.835 r_lrange_it 5.058 r_lrange_other 5.057 r_mcangle_it 3.23 r_mcangle_other 3.23 r_scangle_it 2.862 r_scangle_other 2.862
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.261 r_dihedral_angle_3_deg 21.008 r_dihedral_angle_4_deg 19.78 r_dihedral_angle_1_deg 8.835 r_lrange_it 5.058 r_lrange_other 5.057 r_mcangle_it 3.23 r_mcangle_other 3.23 r_scangle_it 2.862 r_scangle_other 2.862 r_mcbond_it 1.932 r_mcbond_other 1.931 r_scbond_it 1.671 r_scbond_other 1.671 r_angle_refined_deg 1.542 r_angle_other_deg 1.136 r_nbd_other 0.253 r_symmetry_xyhbond_nbd_refined 0.239 r_symmetry_xyhbond_nbd_other 0.235 r_nbd_refined 0.208 r_symmetry_nbd_refined 0.207 r_symmetry_nbd_other 0.187 r_xyhbond_nbd_refined 0.179 r_nbtor_refined 0.171 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.057 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6544 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DIALS data reduction DIALS data scaling PHASER phasing