☰ Navigation Tabs
Crystal structure of Epiphyas postvittana antennal carboxylesterase 24
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5THM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.1 M Tris, pH 7.5
25% SOKALAN CP5
Crystal Properties Matthews coefficient Solvent content 2.83 56.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.475 α = 78.31 b = 113.967 β = 70.18 c = 125.772 γ = 65.88
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2019-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.953646 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.43 48.84 98.2 0.111 0.13 0.067 0.994 8.8 3.7 189143 36.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.43 2.47 97.4 0.804 0.945 0.492 0.655 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5THM 2.43 48.84 179626 9515 98.23 0.1822 0.1805 0.1856 0.2147 0.216 RANDOM 43.791
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.31 -0.6 -0.08 0.32 -0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.907 r_dihedral_angle_3_deg 14.891 r_dihedral_angle_4_deg 14.822 r_dihedral_angle_1_deg 7.174 r_angle_refined_deg 1.35 r_angle_other_deg 1.154 r_chiral_restr 0.055 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.907 r_dihedral_angle_3_deg 14.891 r_dihedral_angle_4_deg 14.822 r_dihedral_angle_1_deg 7.174 r_angle_refined_deg 1.35 r_angle_other_deg 1.154 r_chiral_restr 0.055 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 33184 Nucleic Acid Atoms Solvent Atoms 1198 Heterogen Atoms 488
Software Software Software Name Purpose XDS data reduction Aimless data scaling MoRDa phasing REFMAC refinement PDB_EXTRACT data extraction