7M1W

NMR structure of the Human T-cell leukemia virus 1 matrix protein


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCA100 mM sodium chloride, 50 mM sodium phosphate, 2 mM TCEP, 400 uM [U-99% 13C; U-99% 15N] HTLV-1 Matrix95% H2O/5% D2O100 mM6.01 atm308Bruker AVANCE II 700
23D HNCO100 mM sodium chloride, 50 mM sodium phosphate, 2 mM TCEP, 400 uM [U-99% 13C; U-99% 15N] HTLV-1 Matrix95% H2O/5% D2O100 mM6.01 atm308Bruker AVANCE II 700
33D HNCACB100 mM sodium chloride, 50 mM sodium phosphate, 2 mM TCEP, 400 uM [U-99% 13C; U-99% 15N] HTLV-1 Matrix95% H2O/5% D2O100 mM6.01 atm308Bruker AVANCE II 700
4HN(CO)CACB100 mM sodium chloride, 50 mM sodium phosphate, 2 mM TCEP, 400 uM [U-99% 13C; U-99% 15N] HTLV-1 Matrix95% H2O/5% D2O100 mM6.01 atm308Bruker AVANCE II 700
53D HN(CO)CA100 mM sodium chloride, 50 mM sodium phosphate, 2 mM TCEP, 400 uM [U-99% 13C; U-99% 15N] HTLV-1 Matrix95% H2O/5% D2O100 mM6.01 atm308Bruker AVANCE II 700
102D 1H-15N HSQC100 mM sodium chloride, 50 mM sodium phosphate, 2 mM TCEP, 400 uM [U-99% 13C; U-99% 15N] HTLV-1 Matrix95% H2O/5% D2O100 mM6.01 atm308Bruker AVANCE II 700
93D HCCH-TOCSY ali.100 mM sodium chloride, 50 mM sodium phosphate, 2 mM TCEP, 320 uM [U-99% 13C; U-99% 15N] HTLV-1 Matrix100% D2O100 mM6.01 atm308Bruker AVANCE II 700
83D HCCH-TOCSY arom.100 mM sodium chloride, 50 mM sodium phosphate, 2 mM TCEP, 320 uM [U-99% 13C; U-99% 15N] HTLV-1 Matrix100% D2O100 mM6.01 atm308Bruker AVANCE II 700
73D 13C-separated NOESY100 mM sodium chloride, 50 mM sodium phosphate, 2 mM TCEP, 320 uM [U-99% 13C; U-99% 15N] HTLV-1 Matrix100% D2O100 mM6.01 atm308Bruker AVANCE II 700
63D 15N-separated NOESY100 mM sodium chloride, 50 mM sodium phosphate, 2 mM TCEP, 500 uM [U-99% 15N] HTLV-1 Matrix95% H2O/5% D2O100 mM6.01 atm308Bruker AVANCE II 700
113D 15N-separated TOCSY100 mM sodium chloride, 50 mM sodium phosphate, 2 mM TCEP, 500 uM [U-99% 15N] HTLV-1 Matrix95% H2O/5% D2O100 mM6.01 atm308Bruker AVANCE II 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE II700
NMR Refinement
MethodDetailsSoftware
simulated annealingThe structures are based on a total of 1005 distance restraints. 286 intraresidue, 256 sequential, 263 medium-range, and 200 long-range NOEsCYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCYANAGuntert P.
2chemical shift assignmentCcpNmr Analysis2.4CCPN
3processingCARA1.9.1.2Keller and Wuthrich
4chemical shift assignmentUNIO10Torsten Herrmann
5collectionTopSpinBruker Biospin
6processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax