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HUMAN PI3KDELTA IN COMPLEX WITH COMPOUND 28
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other PREVIOUSLY DERIVED MODEL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 16% PEG6000, 0.10 M KCL, 0.10 M MES PH 6.0
Crystal Properties Matthews coefficient Solvent content 2.62 53.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.551 α = 90 b = 108.59 β = 90 c = 142.424 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.99998 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.96 86.35 99.9 0.093 0.116 13.5 5.2 30000
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.96 3.2 99.8 0.592 0.737 2.6 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PREVIOUSLY DERIVED MODEL 2.96 86.35 29272 649 99.92 0.2146 0.2131 0.2153 0.2805 0.2802 RANDOM 90.701
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.87 2.72 -6.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.745 r_dihedral_angle_4_deg 13.943 r_dihedral_angle_3_deg 12.809 r_dihedral_angle_1_deg 5.452 r_angle_refined_deg 1.014 r_angle_other_deg 0.93 r_chiral_restr 0.057 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.745 r_dihedral_angle_4_deg 13.943 r_dihedral_angle_3_deg 12.809 r_dihedral_angle_1_deg 5.452 r_angle_refined_deg 1.014 r_angle_other_deg 0.93 r_chiral_restr 0.057 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9145 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms 38
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction REFMAC phasing