7LAX

Pseudomonas fluorescens G150T isocyanide hydratase (G150T-2) at 274K, Refmac5-refined


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.629825% PEG 3350, 200 MM MAGNESIUM CHLORIDE, 100MM TRIS-HCL, PH 8.6, 2 MM Dithiothreitol
Crystal Properties
Matthews coefficientSolvent content
2.346.47

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.295α = 90
b = 59.716β = 110.876
c = 69.505γ = 90
Symmetry
Space GroupI 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray274PIXELDECTRIS PILATUS 6MFlat Si Rh coated M0, Kirkpatrick-Baez flat bent Si M1 & M22018-11-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL12-20.775SSRLBL12-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.19835.2298.30.0780.9977.33.866132
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.1981.2295.82.2430.3341.13.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE6ni41.19835.2266132199498.0310.1250.12410.1447random17.442
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.08-0.0290.229-0.221
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg24.432
r_dihedral_angle_4_deg15.391
r_dihedral_angle_3_deg12.663
r_dihedral_angle_1_deg5.809
r_lrange_it3.109
r_lrange_other2.989
r_scangle_it2.543
r_scangle_other2.542
r_scbond_it2.05
r_scbond_other2.049
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg24.432
r_dihedral_angle_4_deg15.391
r_dihedral_angle_3_deg12.663
r_dihedral_angle_1_deg5.809
r_lrange_it3.109
r_lrange_other2.989
r_scangle_it2.543
r_scangle_other2.542
r_scbond_it2.05
r_scbond_other2.049
r_mcangle_other1.825
r_mcangle_it1.823
r_rigid_bond_restr1.544
r_angle_other_deg1.503
r_angle_refined_deg1.492
r_mcbond_it1.486
r_mcbond_other1.481
r_nbd_refined0.228
r_symmetry_xyhbond_nbd_refined0.222
r_xyhbond_nbd_refined0.208
r_symmetry_nbd_other0.174
r_nbd_other0.168
r_symmetry_xyhbond_nbd_other0.167
r_nbtor_refined0.163
r_symmetry_nbd_refined0.144
r_chiral_restr0.083
r_symmetry_nbtor_other0.079
r_bond_refined_d0.009
r_gen_planes_refined0.007
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1673
Nucleic Acid Atoms
Solvent Atoms195
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
autoXDSdata reduction
Aimlessdata scaling
PHASERphasing