7KYP

PsaBC from Streptococcus pneumoniae in complex with Fab

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	0.1 M MES, pH 6.5, 0.2 M calcium chloride dihydrate, 33% v/v PEG400

Crystal Properties
Matthews coefficient	Solvent content
4.37	71.87

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 92.55	α = 95.35
b = 129.56	β = 92.21
c = 169.62	γ = 98.66

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2017-07-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRL BEAMLINE BL12-2	0.9795	SSRL	BL12-2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.9	50	91.7	0.08	9.4	4.2		156113

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.9	3			0.697

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB entry 7KYO	2.9	49.63	148164	7870	90.82	0.26145	0.26041	0.2809	RANDOM	39.333

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
14.11	7.55	5.61	-9.01	-2.1	-5.1

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.404
r_dihedral_angle_3_deg	11.416
r_dihedral_angle_4_deg	11.197
r_dihedral_angle_1_deg	3.974
r_long_range_B_refined	2.015
r_long_range_B_other	2.015
r_angle_refined_deg	0.712
r_angle_other_deg	0.662
r_mcangle_it	0.534
r_mcangle_other	0.534
r_mcbond_it	0.28
r_mcbond_other	0.28
r_scangle_other	0.257
r_scbond_it	0.115
r_scbond_other	0.113
r_chiral_restr	0.038
r_bond_refined_d	0.004
r_gen_planes_refined	0.002
r_bond_other_d	0.001
r_gen_planes_other	0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	30985
Nucleic Acid Atoms
Solvent Atoms	12
Heterogen Atoms	180

Software

Software
Software Name	Purpose
HKL-2000	data reduction
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement