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Cryo-EM structure of Zika virus in complex with E protein cross-linking human monoclonal antibody ADI30056
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6CO8
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.692 f_angle_d 0.997 f_chiral_restr 0.057 f_bond_d 0.008 f_plane_restr 0.007
Sample Zika virus in complex with monoclonal antibody ADI30056 Sample Components Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013 monoclonal antibody ADI30056
Specimen Preparation Sample Aggregation State 2D ARRAY Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 22330 Reported Resolution (Å) 4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (6CO8) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 30
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION FindEM IMAGE ACQUISITION Leginon CTF CORRECTION CTFFIND 4 MODEL FITTING Coot INITIAL EULER ASSIGNMENT jspr FINAL EULER ASSIGNMENT jspr CLASSIFICATION RELION RECONSTRUCTION jspr MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 165789