7K3X

SGMGCIT segment 58-64 from Keratin-8 with G62C mutation


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52980.2M sodium citrate tribasic dehydrate, 0.1M HEPES (pH 7.5), 20% v/v 2-propanol
Crystal Properties
Matthews coefficientSolvent content
1.6525.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 4.74α = 90
b = 46.17β = 103.33
c = 10.33γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2018-06-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C0.9791APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.710093.50.1920.2190.1024.34.4472
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7671.40.9471.1490.6360.0262.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUEideal beta strand1.70523.0864484595.1170.2470.24680.248122.999
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-11.407-4.2621.13410.273
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it18.747
r_lrange_other18.717
r_dihedral_angle_3_deg17.662
r_scangle_it14.861
r_scangle_other14.583
r_scbond_it12.934
r_scbond_other12.609
r_dihedral_angle_1_deg9.503
r_mcangle_it8.142
r_mcangle_other8.003
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it18.747
r_lrange_other18.717
r_dihedral_angle_3_deg17.662
r_scangle_it14.861
r_scangle_other14.583
r_scbond_it12.934
r_scbond_other12.609
r_dihedral_angle_1_deg9.503
r_mcangle_it8.142
r_mcangle_other8.003
r_mcbond_other4.858
r_mcbond_it4.788
r_angle_refined_deg1.908
r_angle_other_deg1.593
r_nbd_other0.332
r_xyhbond_nbd_refined0.243
r_symmetry_nbd_refined0.237
r_symmetry_nbd_other0.203
r_nbtor_refined0.137
r_nbd_refined0.083
r_symmetry_nbtor_other0.077
r_chiral_restr0.07
r_bond_other_d0.061
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms44
Nucleic Acid Atoms
Solvent Atoms1
Heterogen Atoms4

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction