7JPH

Crystal structure of EBOV glycoprotein with modified HR1c and HR2 stalk at 3.2 A resolution

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5	293	0.1 M Sodium citrate, 10% PEG w/v 6000

Crystal Properties
Matthews coefficient	Solvent content
2.34	47.47

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 114.061	α = 90
b = 114.061	β = 90
c = 136.216	γ = 120

Symmetry
Space Group	P 3 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2020-01-22	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRL BEAMLINE BL12-2	0.97	SSRL	BL12-2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.195	49.439	99.9	0.776	8.4	8.9		17343

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3.2	3.31	99.8		0.313	0.45

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5JQ3	3.195	49.439	17082	837	97.65	0.279	0.2766	0.3216	93.62

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.131	-0.565		-1.131		3.668

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.871
r_dihedral_angle_3_deg	18.699
r_dihedral_angle_4_deg	17.346
r_lrange_it	16.706
r_lrange_other	16.704
r_scangle_it	12.702
r_scangle_other	12.7
r_mcangle_it	12.408
r_mcangle_other	12.407
r_dihedral_angle_1_deg	8.753
r_scbond_it	7.849
r_scbond_other	7.849
r_mcbond_it	7.777
r_mcbond_other	7.766
r_angle_refined_deg	1.799
r_angle_other_deg	1.589
r_symmetry_nbd_other	0.217
r_nbd_refined	0.216
r_nbd_other	0.203
r_symmetry_nbd_refined	0.196
r_nbtor_refined	0.178
r_xyhbond_nbd_refined	0.139
r_symmetry_xyhbond_nbd_refined	0.133
r_ext_dist_refined_d	0.124
r_symmetry_nbtor_other	0.094
r_chiral_restr	0.087
r_symmetry_xyhbond_nbd_other	0.058
r_bond_refined_d	0.013
r_bond_other_d	0.013
r_gen_planes_refined	0.009
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3165
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms	91

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing