Experiment: 7FVL

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5.6	277	20% PEG 8000, 0.04M potassium phosphate

Crystal Properties
Matthews coefficient	Solvent content
1.77	30.36

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 81.936	α = 90
b = 27.426	β = 99.96
c = 56.272	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2022-09-24		SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.92124	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.15	55.45	76.6	0.051	0.056	0.023	0.994	25.7	5.1		33702

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.15	1.17	6.6			1	140

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	THROUGHOUT	7av9	1.15	55.42	32019	1679	76.45	0.2704	0.2702	0.2744	RANDOM	16.491

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.02		0.58	1.2		-1.3

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.935
r_dihedral_angle_1_deg	4.958
r_dihedral_angle_2_deg	3.536
r_mcangle_it	1.859
r_angle_refined_deg	1.68
r_mcbond_it	1.295
r_mcbond_other	1.295
r_angle_other_deg	0.871
r_chiral_restr	0.076
r_gen_planes_other	0.019

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.935
r_dihedral_angle_1_deg	4.958
r_dihedral_angle_2_deg	3.536
r_mcangle_it	1.859
r_angle_refined_deg	1.68
r_mcbond_it	1.295
r_mcbond_other	1.295
r_angle_other_deg	0.871
r_chiral_restr	0.076
r_gen_planes_other	0.019
r_bond_refined_d	0.016
r_gen_planes_refined	0.009
r_bond_other_d	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1003
Nucleic Acid Atoms
Solvent Atoms	198
Heterogen Atoms	27

Software

Software
Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
REFMAC	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.