7FVC

PanDDA analysis group deposition -- PHIP in complex with Z495704106


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.627720% PEG 8000, 0.04M potassium phosphate
Crystal Properties
Matthews coefficientSolvent content
1.7630.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.897α = 90
b = 27.34β = 100.05
c = 56.351γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2022-09-24SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.92124DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1827.7581.90.0430.0480.0190.99723.85.233449
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.181.219.10.2150.3040.2140.9451.1382

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT7av91.1827.7631787166281.880.17420.17310.1961RANDOM19.476
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.080.40.92-0.92
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.793
r_dihedral_angle_4_deg15.942
r_dihedral_angle_3_deg12.834
r_dihedral_angle_1_deg5.316
r_mcangle_it2.977
r_angle_refined_deg1.647
r_mcbond_other1.525
r_angle_other_deg1.498
r_mcbond_it1.497
r_chiral_restr0.091
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.793
r_dihedral_angle_4_deg15.942
r_dihedral_angle_3_deg12.834
r_dihedral_angle_1_deg5.316
r_mcangle_it2.977
r_angle_refined_deg1.647
r_mcbond_other1.525
r_angle_other_deg1.498
r_mcbond_it1.497
r_chiral_restr0.091
r_bond_refined_d0.011
r_gen_planes_refined0.008
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1003
Nucleic Acid Atoms
Solvent Atoms213
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
REFMACphasing