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The Fab antibody single structure against tau protein.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4HK3 4HK3, 5EOR experimental model PDB 5EOR 4HK3, 5EOR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 293 20% PEG 3350, 15% Glycerol, 0.1M Ammonium iodide, 10mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.86 57.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 180.14 α = 90 b = 70.78 β = 93.55 c = 41.55 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS VII 2017-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.5406
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 27.82 99.6 0.063 10.1 3.62 22009
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 0.458
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4HK3, 5EOR 2.3 27.82 22009 1186 99.46 0.20441 0.19923 0.2104 0.29907 0.3038 RANDOM 54.789
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.39 1.69 -0.81 2.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.949 r_dihedral_angle_3_deg 16.563 r_dihedral_angle_4_deg 16.547 r_long_range_B_refined 10.582 r_long_range_B_other 10.581 r_dihedral_angle_1_deg 8.962 r_scangle_other 7.427 r_mcangle_it 7.139 r_mcangle_other 7.138 r_mcbond_it 4.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.949 r_dihedral_angle_3_deg 16.563 r_dihedral_angle_4_deg 16.547 r_long_range_B_refined 10.582 r_long_range_B_other 10.581 r_dihedral_angle_1_deg 8.962 r_scangle_other 7.427 r_mcangle_it 7.139 r_mcangle_other 7.138 r_mcbond_it 4.92 r_mcbond_other 4.909 r_scbond_it 4.819 r_scbond_other 4.817 r_angle_refined_deg 1.651 r_angle_other_deg 1.178 r_chiral_restr 0.061 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3245 Nucleic Acid Atoms Solvent Atoms 379 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction CrystalClear data scaling MOLREP phasing Coot model building PDB_EXTRACT data extraction