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Crystal structure of 4E10 modified with pyrene acetamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4WY7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 293 12% PEG 4,000;
200 mM Ammonium sulfate;
100 mM sodium acetate
Crystal Properties Matthews coefficient Solvent content 2.83 56.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 158.109 α = 90 b = 44.89 β = 113.68 c = 86.041 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.97953 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 34.5 98.1 0.089 0.04 0.996 11.2 5.6 96390
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.53 89.9 0.775 0.464 0.454 3 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4WY7 1.45 34.44 93433 2919 97.94 0.1208 0.1199 0.1203 0.1505 0.1502 RANDOM 20.482
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 0.01 0.06 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.597 r_dihedral_angle_1_deg 26.264 r_dihedral_angle_4_deg 22.846 r_dihedral_angle_3_deg 11.339 r_rigid_bond_restr 2.836 r_angle_refined_deg 1.643 r_angle_other_deg 1.456 r_chiral_restr 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.597 r_dihedral_angle_1_deg 26.264 r_dihedral_angle_4_deg 22.846 r_dihedral_angle_3_deg 11.339 r_rigid_bond_restr 2.836 r_angle_refined_deg 1.643 r_angle_other_deg 1.456 r_chiral_restr 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3370 Nucleic Acid Atoms Solvent Atoms 480 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling PHASER phasing