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X-ray crystal structure of Pseudomonas aeruginosa MagC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293 30% w/v PEG6000, 100 mM Citrate pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.02 39.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.737 α = 90 b = 110.737 β = 90 c = 41.11 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2016-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.458680 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 37.79 98.4 0.045 1 26.91 6.6 18977 -3 31.783
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.74 1.85 93.7 0.569 0.889 3 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R-VALUE 1.74 37.785 18977 1868 98.403 0.196 0.1932 0.2219 0.2151 39.74
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.416 0.208 0.416 -1.349
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.329 r_dihedral_angle_4_deg 15.832 r_dihedral_angle_3_deg 12.833 r_lrange_it 7.374 r_lrange_other 7.371 r_dihedral_angle_1_deg 6.44 r_scangle_other 4.661 r_scangle_it 4.656 r_mcangle_it 3.426 r_mcangle_other 3.424
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.329 r_dihedral_angle_4_deg 15.832 r_dihedral_angle_3_deg 12.833 r_lrange_it 7.374 r_lrange_other 7.371 r_dihedral_angle_1_deg 6.44 r_scangle_other 4.661 r_scangle_it 4.656 r_mcangle_it 3.426 r_mcangle_other 3.424 r_scbond_it 3.093 r_scbond_other 3.044 r_mcbond_it 2.352 r_mcbond_other 2.346 r_angle_other_deg 1.271 r_angle_refined_deg 1.267 r_symmetry_nbd_other 0.212 r_nbd_refined 0.209 r_nbd_other 0.197 r_symmetry_xyhbond_nbd_refined 0.197 r_symmetry_nbd_refined 0.188 r_nbtor_refined 0.171 r_xyhbond_nbd_refined 0.14 r_symmetry_nbtor_other 0.076 r_chiral_restr 0.058 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1545 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling Arcimboldo phasing