☰ Navigation Tabs
Crystal structure of the human alpha1B adrenergic receptor in complex with inverse agonist (+)-cyclazosin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6IBL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 6 293.15 100 mM MES
400-480 mM Li citrate
28-33% (w/v) PEG400
10 mM L-glutathione reduced form
10 uM cyclazosin
Crystal Properties Matthews coefficient Solvent content 3.9 68.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.883 α = 90 b = 76.415 β = 90 c = 151.634 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.873 28.726 89 0.774 0.316 0.618 5.5 6.9 14777
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.874 3.066 5.989 2.615 0.159 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6IBL 2.873 28.726 14776 743 79.287 0.291 0.2894 0.2906 0.3166 0.3217 28.771
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.451 0.343 -0.794
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.441 r_dihedral_angle_4_deg 15.971 r_dihedral_angle_3_deg 15.269 r_lrange_it 5.832 r_lrange_other 5.831 r_dihedral_angle_1_deg 5.565 r_mcangle_it 2.457 r_mcangle_other 2.457 r_scangle_it 2.074 r_scangle_other 2.073
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.441 r_dihedral_angle_4_deg 15.971 r_dihedral_angle_3_deg 15.269 r_lrange_it 5.832 r_lrange_other 5.831 r_dihedral_angle_1_deg 5.565 r_mcangle_it 2.457 r_mcangle_other 2.457 r_scangle_it 2.074 r_scangle_other 2.073 r_mcbond_it 1.457 r_mcbond_other 1.453 r_angle_refined_deg 1.275 r_scbond_it 1.207 r_scbond_other 1.207 r_angle_other_deg 1.153 r_symmetry_nbd_refined 0.413 r_nbd_other 0.304 r_symmetry_xyhbond_nbd_refined 0.185 r_nbd_refined 0.182 r_symmetry_nbd_other 0.177 r_nbtor_refined 0.155 r_xyhbond_nbd_refined 0.135 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.046 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3206 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing