7AUH

Structure of P. aeruginosa PBP3 in complex with vaborbactam

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8	293	25%(w/v) polyethylene glycol 3350, 0.1M Bis-Tris propane, 1%(w/v) protamine sulphate, pH 8

Crystal Properties
Matthews coefficient	Solvent content
2.34	47.4

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 68.175	α = 90
b = 83.659	β = 90
c = 89.53	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2018-04-24	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04	0.97950	Diamond	I04

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.012	61.126	94	0.074	0.027	0.999	15.5	8.5		25128

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.012	2.215	62.9		1.041	0.429	0.679		6.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6HZR	2.012	61.126	25128	1161	72.476	0.211	0.2077	0.2809	48.485

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.48			-0.171		-0.309

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.01
r_dihedral_angle_4_deg	20.085
r_dihedral_angle_3_deg	16.147
r_lrange_other	9.199
r_lrange_it	9.198
r_dihedral_angle_1_deg	7.685
r_scangle_it	6.658
r_scangle_other	6.656
r_mcangle_it	6.418
r_mcangle_other	6.417
r_mcbond_other	4.413
r_mcbond_it	4.412
r_scbond_it	4.375
r_scbond_other	4.374
r_angle_refined_deg	1.622
r_angle_other_deg	1.247
r_symmetry_xyhbond_nbd_refined	0.235
r_nbd_refined	0.217
r_nbd_other	0.205
r_xyhbond_nbd_refined	0.189
r_symmetry_nbd_other	0.186
r_nbtor_refined	0.163
r_symmetry_nbd_refined	0.148
r_symmetry_nbtor_other	0.078
r_chiral_restr	0.067
r_symmetry_xyhbond_nbd_other	0.04
r_bond_refined_d	0.009
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3841
Nucleic Acid Atoms
Solvent Atoms	107
Heterogen Atoms	26

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
STARANISO	data processing
PDB_EXTRACT	data extraction
PHASER	phasing