☰ Navigation Tabs
Crystal structure of siderophore reductase FoxB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 289 30% PEG600
100 mm Bicine pH9
100 mM ZnSO4
Crystal Properties Matthews coefficient Solvent content 5.06 75.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 237.065 α = 90 b = 114.321 β = 90 c = 64.382 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2020-05-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 0.987 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.35 47.4 92.5 0.062 0.066 0.021 0.998 22.7 19.3 15384
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.35 3.717 73.3 1.4 1.48 0.99 0.839 2.8 13.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 3.35 46.36 14617 767 59.32 0.2663 0.2646 0.2632 0.2988 0.3057 RANDOM 40.871
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.83 2.78 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.361 r_dihedral_angle_4_deg 17.795 r_dihedral_angle_3_deg 14.726 r_dihedral_angle_1_deg 7.522 r_angle_refined_deg 2.001 r_angle_other_deg 1.811 r_chiral_restr 0.244 r_gen_planes_other 0.022 r_bond_other_d 0.017 r_bond_refined_d 0.014
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.361 r_dihedral_angle_4_deg 17.795 r_dihedral_angle_3_deg 14.726 r_dihedral_angle_1_deg 7.522 r_angle_refined_deg 2.001 r_angle_other_deg 1.811 r_chiral_restr 0.244 r_gen_planes_other 0.022 r_bond_other_d 0.017 r_bond_refined_d 0.014 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5774 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 273
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction SHELXCD phasing