X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52770.1 M Bis-Tris Propane, 0.2 M Magnesium Chloride, 28 % PEG 4000
Crystal Properties
Matthews coefficientSolvent content
2.4649.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.73α = 90
b = 112.85β = 90
c = 135.81γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2016-10-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X6A1NSLSX6A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5467.911000.0360.0390.015122.96.5104874
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.541.570.5391.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.5467.999539524299.930.17170.16950.2147RANDOM39.247
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-4.423.470.95
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free42.512
r_sphericity_bonded41.463
r_dihedral_angle_2_deg34.826
r_dihedral_angle_4_deg16.031
r_dihedral_angle_3_deg13.494
r_rigid_bond_restr9.357
r_dihedral_angle_1_deg5.439
r_angle_refined_deg1.67
r_angle_other_deg1.149
r_chiral_restr0.091
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free42.512
r_sphericity_bonded41.463
r_dihedral_angle_2_deg34.826
r_dihedral_angle_4_deg16.031
r_dihedral_angle_3_deg13.494
r_rigid_bond_restr9.357
r_dihedral_angle_1_deg5.439
r_angle_refined_deg1.67
r_angle_other_deg1.149
r_chiral_restr0.091
r_bond_refined_d0.015
r_gen_planes_refined0.009
r_gen_planes_other0.003
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4723
Nucleic Acid Atoms
Solvent Atoms503
Heterogen Atoms3

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PDB_EXTRACTdata extraction
xia2data reduction
AutoSolphasing