6QJA | pdb_00006qja

Organizational principles of the NuMA-Dynein interaction interface and implications for mitotic spindle functions

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PrgH	e6qjaD1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (v294.1)
C	PrgH	e6qjaC1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (v294.1)
B	PrgH	e6qjaB1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (v294.1)
A		e6qjaA1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: Restriction endonuclease-like	F:	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF21670	NuMA N-terminal hook domain (HOOK_N_NuMA)	NuMA N-terminal hook domain	Mitotic progression is orchestrated by the microtubule-based motor dynein, which sustains all mitotic spindle functions [1]. During cell division, cytoplasmic dynein acts with the high-molecular-weight complex dynactin and nuclear mitotic apparatus ( ...	Mitotic progression is orchestrated by the microtubule-based motor dynein, which sustains all mitotic spindle functions [1]. During cell division, cytoplasmic dynein acts with the high-molecular-weight complex dynactin and nuclear mitotic apparatus (NuMA) to organize and position the spindle [1]. NuMA contains a hook domain contacting directly LIC1 and LIC2 chains through a conserved hydrophobic patch shared among other Hook adaptors [1]. Hook adaptor proteins share an N-terminal conserved globular hook domain, which folds as a variant of the helical calponin homology (CH) domain [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Nuclear mitotic apparatus protein 1	ion binding binding anion binding phosphatidylinositol binding small molecule binding cytoskeletal protein binding microtubule binding protein binding tubulin binding protein-containing complex binding microtubule plus-end binding microtubule minus-end binding protein domain specific binding structural molecule activity ion binding binding anion binding phosphatidylinositol binding small molecule binding cytoskeletal protein binding microtubule binding protein binding tubulin binding protein-containing complex binding microtubule plus-end binding microtubule minus-end binding protein domain specific binding structural molecule activity disordered domain specific binding dynein complex binding	cellular process cell division positive regulation of chromosome segregation regulation of chromosome segregation regulation of biological process regulation of cellular process regulation of cell cycle process biological regulation positive regulation of biological process positive regulation of cell cycle positive regulation of cell cycle process cell cycle regulation of cell cycle chromosome segregation cellular process cell division positive regulation of chromosome segregation regulation of chromosome segregation regulation of biological process regulation of cellular process regulation of cell cycle process biological regulation positive regulation of biological process positive regulation of cell cycle positive regulation of cell cycle process cell cycle regulation of cell cycle chromosome segregation positive regulation of cellular process cell cycle process establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization establishment or maintenance of cell polarity mitotic cell cycle cellular component organization localization establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation organelle localization establishment of localization in cell cellular component organization or biogenesis microtubule cytoskeleton organization involved in mitosis establishment of localization establishment of cell polarity organelle organization mitotic cell cycle process establishment of mitotic spindle orientation microtubule-based process cytoskeleton organization organelle assembly anastral spindle assembly membraneless organelle assembly spindle assembly cellular component biogenesis cellular component assembly spindle organization protein localization to microtubule cytoskeleton regulation of localization regulation of protein localization regulation of protein localization to spindle pole body positive regulation of protein localization to spindle pole body protein localization to microtubule organizing center macromolecule localization protein localization to cytoskeleton protein localization to organelle positive regulation of protein localization protein localization to spindle pole body intracellular protein localization positive regulation of organelle organization regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization regulation of cellular component organization positive regulation of cellular component organization regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly microtubule polymerization or depolymerization positive regulation of protein polymerization protein-containing complex assembly protein polymerization positive regulation of microtubule polymerization or depolymerization protein-containing complex organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization regulation of microtubule-based process microtubule polymerization positive regulation of supramolecular fiber organization regulation of cellular component biogenesis regulation of organelle organization positive regulation of microtubule polymerization regulation of protein polymerization regulation of microtubule polymerization regulation of supramolecular fiber organization supramolecular fiber organization regulation of microtubule cytoskeleton organization nucleus organization metaphase chromosome alignment chromosome localization nuclear chromosome segregation regulation of metaphase plate congression chromosome separation positive regulation of chromosome separation regulation of chromosome separation microtubule bundle formation positive regulation of spindle assembly regulation of spindle organization regulation of spindle assembly regulation of organelle assembly positive regulation of organelle assembly cellular response to stimulus positive regulation of cell communication cell surface receptor protein serine/threonine kinase signaling pathway positive regulation of signal transduction cellular response to growth factor stimulus response to stimulus signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway regulation of signal transduction positive regulation of BMP signaling pathway cell communication positive regulation of response to stimulus cellular response to endogenous stimulus signal transduction BMP signaling pathway enzyme-linked receptor protein signaling pathway cellular response to BMP stimulus regulation of signaling cell surface receptor signaling pathway regulation of BMP signaling pathway response to endogenous stimulus regulation of cellular response to growth factor stimulus positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway response to BMP regulation of response to stimulus regulation of cell communication transforming growth factor beta receptor superfamily signaling pathway response to growth factor positive regulation of signaling regulation of mitotic spindle organization mitotic spindle organization positive regulation of protein localization to cell periphery protein localization to cell periphery positive regulation of protein localization to cell cortex regulation of protein localization to cell periphery regulation of protein localization to cell cortex protein localization to cell cortex astral microtubule organization cytoplasmic microtubule organization transport regulation of transport intracellular transport positive regulation of transport regulation of cellular localization positive regulation of intracellular transport regulation of intracellular transport multicellular organismal process regulation of developmental process epidermis development molting cycle process regulation of hair cycle positive regulation of developmental process multicellular organism development skin epidermis development hair follicle development anatomical structure development regulation of multicellular organismal process developmental process epithelium development regulation of multicellular organismal development hair cycle animal organ development tissue development positive regulation of hair follicle development skin development molting cycle regulation of hair follicle development positive regulation of multicellular organismal process hair cycle process mitotic spindle elongation spindle elongation regulation of spindle elongation sister chromatid segregation regulation of chromosome organization positive regulation of chromosome organization regulation of mitotic sister chromatid segregation mitotic sister chromatid segregation positive regulation of mitotic spindle elongation mitotic nuclear division organelle fission chromosome organization positive regulation of mitotic sister chromatid segregation nuclear division regulation of sister chromatid segregation regulation of mitotic spindle elongation positive regulation of keratinocyte differentiation cellular developmental process regulation of epidermal cell differentiation regulation of cell differentiation epithelial cell differentiation regulation of epithelial cell differentiation positive regulation of cell differentiation cell differentiation epidermal cell differentiation positive regulation of epidermis development positive regulation of epithelial cell differentiation keratinocyte differentiation regulation of epidermis development regulation of keratinocyte differentiation positive regulation of epidermal cell differentiation sexual reproduction reproductive process meiotic cell cycle	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle cytoplasm cytosol polymeric cytoskeletal fiber microtubule end microtubule minus-end supramolecular fiber microtubule supramolecular polymer supramolecular complex somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection cell periphery cell cortex lateral cell cortex cell cortex region lateral part of cell cytoplasmic region cortical cytoskeleton cortical microtubule cytoplasmic microtubule cortical microtubule cytoskeleton chromosome mitotic spindle mitotic spindle midzone spindle midzone cell body neuronal cell body mitotic spindle pole microtubule bundle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen organelle lumen nuclear lumen nuclear matrix aster mitotic spindle astral microtubule astral microtubule spindle microtubule centrosome microtubule organizing center microtubule plus-end plasma membrane membrane nucleoplasm protein-containing complex spindle pole centrosome lateral plasma membrane cytoplasmic microtubule bundle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR048726	Nuclear mitotic apparatus protein 1, LGN binding domain	Domain
A, B, C, D	IPR051841	Microtubule and Golgi organization protein	Family
A, B, C, D	IPR048724	Nuclear mitotic apparatus protein 1, N-terminal hook domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q14980	acute promyelocytic leukemia allergic contact dermatitis psoriasis acute myeloid leukemia astrocytic tumor gastric carcinoma large cell medulloblastoma medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma tuberculosis exocrine pancreatic carcinoma Gaucher disease malignant ependymoma myeloid leukemia acute promyelocytic leukemia allergic contact dermatitis psoriasis acute myeloid leukemia astrocytic tumor gastric carcinoma large cell medulloblastoma medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma tuberculosis exocrine pancreatic carcinoma Gaucher disease malignant ependymoma myeloid leukemia ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia urinary bladder disease gastric cancer interstitial lung disease malignant pancreatic neoplasm myopathy pancreatic ductal adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.