6QJA | pdb_00006qja

Organizational principles of the NuMA-Dynein interaction interface and implications for mitotic spindle functions

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	8.5	277	0.1 M Bis-Tris Propane, 0.2 M Magnesium Chloride, 28 % PEG 4000

Crystal Properties
Matthews coefficient	Solvent content
2.46	49.99

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 45.73	α = 90
b = 112.85	β = 90
c = 135.81	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2016-10-26	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	NSLS BEAMLINE X6A	1	NSLS	X6A

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.54	67.91	100	0.036	0.039	0.015	1	22.9	6.5		104874

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.54	1.57			0.539	1.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	1.54	67.9	99539	5242	99.93	0.1717	0.1695	0.18	0.2147	0.23	RANDOM	39.247

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-4.42			3.47		0.95

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	42.512
r_sphericity_bonded	41.463
r_dihedral_angle_2_deg	34.826
r_dihedral_angle_4_deg	16.031
r_dihedral_angle_3_deg	13.494
r_rigid_bond_restr	9.357
r_dihedral_angle_1_deg	5.439
r_angle_refined_deg	1.67
r_angle_other_deg	1.149
r_chiral_restr	0.091

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	42.512
r_sphericity_bonded	41.463
r_dihedral_angle_2_deg	34.826
r_dihedral_angle_4_deg	16.031
r_dihedral_angle_3_deg	13.494
r_rigid_bond_restr	9.357
r_dihedral_angle_1_deg	5.439
r_angle_refined_deg	1.67
r_angle_other_deg	1.149
r_chiral_restr	0.091
r_bond_refined_d	0.015
r_gen_planes_refined	0.009
r_gen_planes_other	0.003
r_bond_other_d	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4723
Nucleic Acid Atoms
Solvent Atoms	503
Heterogen Atoms	3

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
PDB_EXTRACT	data extraction
xia2	data reduction
AutoSol	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.