6QH7

AP2 clathrin adaptor mu2T156-phosphorylated core with two cargo peptides in open+ conformation


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.42897.5% PVA, 9% 1-propanol, 90 mM Hepes pH 7.4, 100 mM guanidine hydrochloride
Crystal Properties
Matthews coefficientSolvent content
3.463.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 182.177α = 90
b = 182.177β = 90
c = 211.602γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2013-12-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.92DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.411099.90.280.290.9938.813.8849558100
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.43.599.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.411046920252999.770.209860.207770.24815RANDOM143.733
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.27-0.270.54
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.866
r_long_range_B_refined22.633
r_long_range_B_other22.633
r_dihedral_angle_3_deg19.883
r_dihedral_angle_4_deg15.234
r_mcangle_it15.105
r_mcangle_other15.104
r_scangle_other14.85
r_mcbond_it9.804
r_mcbond_other9.803
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.866
r_long_range_B_refined22.633
r_long_range_B_other22.633
r_dihedral_angle_3_deg19.883
r_dihedral_angle_4_deg15.234
r_mcangle_it15.105
r_mcangle_other15.104
r_scangle_other14.85
r_mcbond_it9.804
r_mcbond_other9.803
r_scbond_it9.216
r_scbond_other9.214
r_dihedral_angle_1_deg7.551
r_angle_refined_deg1.493
r_angle_other_deg1.022
r_chiral_restr0.082
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13342
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
PHASERphasing