☰ Navigation Tabs
NMR structure of the 2:1 complex of a carbazole derivative BMVC bound to c-MYC G-quadruplex
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 2 mM DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), 3 mM BMVC, 25 mM potassium phosphate, 70 mM potassium chloride 90% H2O/10% D2O 100 mM 7 1 atm 298 Bruker DRX 600 2 2D DQF-COSY 2 mM DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), 3 mM BMVC, 25 mM potassium phosphate, 70 mM potassium chloride 90% H2O/10% D2O 100 mM 7 1 atm 298 Bruker DRX 600 3 2D 1H-1H TOCSY 2 mM DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), 3 mM BMVC, 25 mM potassium phosphate, 70 mM potassium chloride 90% H2O/10% D2O 100 mM 7 1 atm 298 Bruker DRX 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 600
NMR Refinement Method Details Software simulated annealing DGSA-distance geometry simulated annealing X-PLOR molecular dynamics Insight II
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR Brunger 2 refinement Insight II Accelrys Software Inc. 3 chemical shift assignment Sparky Goddard 4 peak picking Sparky Goddard 5 structure calculation Insight II Accelrys Software Inc.