6O2L

NMR structure of the 2:1 complex of a carbazole derivative BMVC bound to c-MYC G-quadruplex

  • Classification: DNA
  • Organism(s): Homo sapiens

  • Deposited: 2019-02-24 Released: 2019-10-23 
  • Deposition Author(s): Lin, C., Liu, W., Yang, D.
  • Funding Organization(s): National Institutes of Health/National Cancer Institute 

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Solution structures of the c-MYC Promoter G-quadruplex bound to a carbazole derivative: Insights into small molecule conformational switch for optimal G4-binding

Liu, W.Lin, C.Wu, G.Chang, T.C.Yang, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3')A22Homo sapiens
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BO6
Query on BO6

Download SDF File 
Download CCD File 
A
3,6-bis[(E)-2-(1-methylpyridin-1-ium-4-yl)ethenyl]-9H-carbazole
C28 H25 N3
LXYNXOVLEQWDLL-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer InstituteUnited StatesR01CA177585
National Institutes of Health/National Cancer InstituteUnited StatesP30CA023168

Revision History 

  • Version 1.0: 2019-10-23
    Type: Initial release