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Capsid protein and C-terminal part of CpmB protein in the Staphylococcus aureus pathogenicity island 1 80alpha-derived procapsid
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.084 r_dihedral_angle_3_deg 15.303 r_long_range_B_refined 14.62 r_long_range_B_other 14.62 r_dihedral_angle_4_deg 11.317 r_mcangle_it 5.578 r_mcangle_other 5.577 r_dihedral_angle_1_deg 5.556 r_scangle_other 4.595 r_mcbond_it 3.066
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.084 r_dihedral_angle_3_deg 15.303 r_long_range_B_refined 14.62 r_long_range_B_other 14.62 r_dihedral_angle_4_deg 11.317 r_mcangle_it 5.578 r_mcangle_other 5.577 r_dihedral_angle_1_deg 5.556 r_scangle_other 4.595 r_mcbond_it 3.066 r_mcbond_other 3.066 r_scbond_it 2.315 r_scbond_other 2.314 r_angle_refined_deg 1.002 r_angle_other_deg 0.845 r_chiral_restr 0.061 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Lysogenic 80alpha with small terminase
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 14087 Reported Resolution (Å) 3.7 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Data Acquisition Detector Type DIRECT ELECTRON DE-20 (5k x 3k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING ONLY