6AHX

Copper-Sensing Operon Regulator Protein (CsoRGz)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5293.955% (v/v) Tacsimate TM pH 7.0, 0.1 M HEPES pH 7.0, 10% (w/v) PEG monomethyl ether 5000
Crystal Properties
Matthews coefficientSolvent content
1.8339.24

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.73α = 90
b = 44.73β = 90
c = 82.37γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 200K2016-12-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODECu FINE FOCUS1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1238.741000.03145.73.26882
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.030.028

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3AAI238.74618434595.190.199960.19670.25796RANDOM35.033
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.060.531.06-3.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.007
r_dihedral_angle_4_deg22.046
r_dihedral_angle_3_deg18.657
r_long_range_B_refined9.797
r_long_range_B_other9.638
r_scangle_other8.309
r_dihedral_angle_1_deg5.246
r_scbond_it5.216
r_scbond_other5.205
r_mcangle_it3.602
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.007
r_dihedral_angle_4_deg22.046
r_dihedral_angle_3_deg18.657
r_long_range_B_refined9.797
r_long_range_B_other9.638
r_scangle_other8.309
r_dihedral_angle_1_deg5.246
r_scbond_it5.216
r_scbond_other5.205
r_mcangle_it3.602
r_mcangle_other3.6
r_mcbond_it2.589
r_mcbond_other2.573
r_angle_refined_deg1.961
r_angle_other_deg1.036
r_chiral_restr0.103
r_bond_refined_d0.018
r_gen_planes_refined0.009
r_bond_other_d0.003
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms471
Nucleic Acid Atoms
Solvent Atoms48
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing