6AHX | pdb_00006ahx

Copper-Sensing Operon Regulator Protein (CsoRGz)

PDB DOI: https://doi.org/10.2210/pdb6AHX/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Geobacillus zalihae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-08-21 Released: 2019-10-23
Deposition Author(s): Normi, M.Y., Mangavelu, A., Sayangku, A.A., Jonet, M.A., Adam, T.C.L., Ali, M.S.M., Rahman, R.N.Z.R.A., Salleh, A.B.
Funding Organization(s): Universiti Putra Malaysia Putra Postgraduate Initiative Grant

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.258 (Depositor), 0.261 (DCC)
R-Value Work:
0.197 (Depositor), 0.209 (DCC)
R-Value Observed:
0.200 (Depositor)

Starting Model: experimental
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This is version 1.4 of the entry. See complete history.

Literature

Crystallization, Structural Determination and Analysis of Copper-sensing Operon Regulator Protein (CsoRGz) of Geobacillus zalihae Strain T1

Normi, M.Y., Mangavelu, A., Sayangku, A.A., Jonet, M.A., Adam, T.C.L., Ali, M.S.M., Rahman, R.N.Z.R.A., Salleh, A.B.

To be published.

Macromolecule Content

Total Structure Weight: 11.78 kDa
Atom Count: 519
Modeled Residue Count: 60
Deposited Residue Count: 101
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative cytosolic protein	A	101	Geobacillus zalihae	Mutation(s): 0
UniProt
Find proteins for A0ACD6B9S4 (Geobacillus sp. WSUCF1) Explore A0ACD6B9S4 Go to UniProtKB: A0ACD6B9S4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0ACD6B9S4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.258 (Depositor), 0.261 (DCC)
R-Value Work: 0.197 (Depositor), 0.209 (DCC)
R-Value Observed: 0.200 (Depositor)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.73	α = 90
b = 44.73	β = 90
c = 82.37	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2019-10-23

Deposition Author(s):

Rahman, R.N.Z.R.A.

Funding Organization	Location	Grant Number
Universiti Putra Malaysia Putra Postgraduate Initiative Grant	Malaysia	9502200

Revision History (Full details and data files)

Version 1.0: 2019-10-23
Type: Initial release
Version 1.1: 2020-05-20
Changes: Author supporting evidence
Version 1.2: 2020-07-01
Changes: Source and taxonomy
Version 1.3: 2023-11-22
Changes: Data collection, Database references, Refinement description
Version 1.4: 2024-10-23
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.