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The atomic structure of HAdV-F41 at pH 7.4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5TX1
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.827 f_angle_d 0.904 f_chiral_restr 0.071 f_bond_d 0.006 f_plane_restr 0.006
Sample Human adenovirus 41
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 19472 Reported Resolution (Å) 3.77 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (5TX1) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 QUANTUM (4k x 4k) Electron Dose (electrons/Å**2) 1.03
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 130000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION EPU CTF CORRECTION Gctf 1.18 MODEL FITTING PHENIX 1.18-3845 INITIAL EULER ASSIGNMENT RELION 3.0-beta FINAL EULER ASSIGNMENT RELION 3.0-beta CLASSIFICATION RELION 3.0-beta RECONSTRUCTION RELION 3.0-beta MODEL REFINEMENT PHENIX 1.18-3845
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE 25667