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Structure of SMG1-8-9 kinase complex bound to UPF1-LSQ
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6SYT
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 7.823 f_angle_d 0.746 f_chiral_restr 0.079 f_bond_d 0.004 f_plane_restr 0.004
Sample SMG1-8-9 bound to AMPPNP and UPF1-LSQ Sample Components SMG1-8-9 UPF1-LSQ
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 481754 Reported Resolution (Å) 2.97 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (6SYT) Refinement Space Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 68.75
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode OTHER Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM CTF CORRECTION CTFFIND 4.1 MODEL REFINEMENT PHENIX 1.17 CLASSIFICATION RELION 3.0 RECONSTRUCTION RELION 3.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 4368586