☰ Navigation Tabs
CRYSTAL STRUCTURE OF ASGPR 1 IN COMPLEX WITH GN-A.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DV8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 Protein Buffer: 20 mM Tris-HCl (pH 7.4), 25 mM CaCl2.
Reservoir: 100 mM Tris-Hcl (pH 7.5), 28% PEG4000
Crystal Properties Matthews coefficient Solvent content 2.05 40.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.75 α = 90 b = 32.53 β = 93.82 c = 39.65 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.999910 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.397 57.25 55.7 0.078 0.078 11.1 6.3 16299
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.397 1.558 10.1 0.912 0.912 0.593 1.4 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1dv8 1.397 57.25 16299 842 54.6 0.175 0.172 0.219 0.1681 RANDOM 22.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2257 -0.2735 -0.1956 -0.0301
RMS Deviations Key Refinement Restraint Deviation t_angle_deg 1.01 t_bond_d 0.01 t_dihedral_angle_d t_gen_planes t_it t_nbd t_chiral_improper_torsion t_sum_occupancies t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1078 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 25
Software Software Software Name Purpose XDS data reduction BUSTER refinement autoPROC data extraction STARANISO data scaling PHASER phasing