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Capsid structure of Leishmania RNA virus 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1M1C
Sample Leishmania RNA virus 1 - 4
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK II Cryogen Name ETHANE Sample Vitrification Details blot force 3
blot time 5
wait time 10
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 16901 Reported Resolution (Å) 3.65 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (1M1C) Refinement Space RECIPROCAL Refinement Protocol RIGID BODY FIT Refinement Target R-factor Overall B Value 174 Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 21
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) -0.5 Maximum Defocus (nm) 0.5 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 75000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4 MODEL FITTING PHENIX INITIAL EULER ASSIGNMENT RELION 2.1 FINAL EULER ASSIGNMENT RELION CLASSIFICATION RELION RECONSTRUCTION RELION MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 28000