☰ Navigation Tabs
Cryo-EM structure of SMCR8-C9orf72-WDR41 complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6NZD experimental model PDB 6CES experimental model PDB 3TW8
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 3.147 f_angle_d 0.451 f_chiral_restr 0.041 f_plane_restr 0.003 f_bond_d 0.001
Sample Complex of SMCR8-C9orf72-WDR41
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 381450 Reported Resolution (Å) 3.8 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (6NZD, 6NZD, 6CES, 3TW8) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 59.8
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM 3.6.14 CTF CORRECTION Gctf 1.06 MODEL FITTING Coot 0.9 MODEL FITTING Coot 0.8.9.1 RECONSTRUCTION cryoSPARC v2 RECONSTRUCTION RELION 3.0-beta MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE 4810184