Annotations: 6V4U

Cryo-EM structure of SMCR8-C9orf72-WDR41 complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth C]		e6v4uC1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth B]	PF11704	Vesicle coat protein involved in Golgi to plasma membrane transport (Folliculin)	Vesicle coat protein involved in Golgi to plasma membrane transport	-	Family
B [auth A]	PF15019	C9orf72-like protein family (C9orf72-like)	C9orf72-like protein family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth B]	Guanine nucleotide exchange protein SMCR8	enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase regulator activity kinase inhibitor activity kinase regulator activity protein binding binding kinase binding enzyme binding protein kinase binding GTPase regulator activity enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase regulator activity kinase inhibitor activity kinase regulator activity protein binding binding kinase binding enzyme binding protein kinase binding GTPase regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity enzyme activator activity GTPase activator activity molecular function activator activity	regulation of localization regulation of cellular process transport negative regulation of biological process negative regulation of transport vesicle-mediated transport localization negative regulation of secretion regulation of secretion by cell secretion by cell negative regulation of exocytosis negative regulation of cellular process negative regulation of secretion by cell regulation of biological process regulation of localization regulation of cellular process transport negative regulation of biological process negative regulation of transport vesicle-mediated transport localization negative regulation of secretion regulation of secretion by cell secretion by cell negative regulation of exocytosis negative regulation of cellular process negative regulation of secretion by cell regulation of biological process regulation of transport secretion biological regulation export from cell regulation of vesicle-mediated transport establishment of localization regulation of secretion exocytosis regulation of exocytosis cellular process catabolic process autophagy metabolic process process utilizing autophagic mechanism cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction positive regulation of TOR signaling signal transduction positive regulation of cellular process TOR signaling regulation of signaling regulation of TOR signaling positive regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication positive regulation of signaling regulation of cellular component organization macroautophagy negative regulation of organelle assembly autophagosome organization regulation of autophagy cellular component biogenesis cellular component organization cellular component assembly cellular component organization or biogenesis negative regulation of autophagosome assembly negative regulation of catabolic process autophagosome assembly organelle assembly vacuole organization negative regulation of cellular component organization negative regulation of metabolic process regulation of autophagosome assembly regulation of vacuole organization regulation of catabolic process regulation of cellular component biogenesis regulation of organelle organization negative regulation of macroautophagy organelle organization regulation of macroautophagy negative regulation of organelle organization negative regulation of autophagy regulation of organelle assembly regulation of metabolic process immune response negative regulation of response to stimulus negative regulation of immune response negative regulation of immune system process immune system process regulation of immune response regulation of immune system process regulation of TORC1 signaling TORC1 signaling regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process macromolecule metabolic process negative regulation of macromolecule metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process positive regulation of organelle organization positive regulation of cellular component organization regulation of autophagosome maturation protein-containing complex disassembly regulation of protein-containing complex disassembly positive regulation of metabolic process autophagosome maturation positive regulation of macroautophagy positive regulation of protein-containing complex disassembly cellular component disassembly positive regulation of autophagy protein-containing complex organization positive regulation of autophagosome maturation positive regulation of catabolic process	protein kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex cellular anatomical structure intracellular anatomical structure catalytic complex serine/threonine protein kinase complex Atg1/ULK1 kinase complex cytoplasm transferase complex presynapse synapse cell junction postsynapse protein kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex cellular anatomical structure intracellular anatomical structure catalytic complex serine/threonine protein kinase complex Atg1/ULK1 kinase complex cytoplasm transferase complex presynapse synapse cell junction postsynapse membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome guanyl-nucleotide exchange factor complex intracellular protein-containing complex
B [auth A]	Guanine nucleotide exchange C9orf72	small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity guanyl-nucleotide exchange factor activity	regulation of localization regulation of cellular process transport negative regulation of biological process negative regulation of transport vesicle-mediated transport localization negative regulation of secretion regulation of secretion by cell secretion by cell negative regulation of exocytosis negative regulation of cellular process negative regulation of secretion by cell regulation of biological process regulation of localization regulation of cellular process transport negative regulation of biological process negative regulation of transport vesicle-mediated transport localization negative regulation of secretion regulation of secretion by cell secretion by cell negative regulation of exocytosis negative regulation of cellular process negative regulation of secretion by cell regulation of biological process regulation of transport secretion biological regulation export from cell regulation of vesicle-mediated transport establishment of localization regulation of secretion exocytosis regulation of exocytosis cellular process membrane organization catabolic process macroautophagy membrane fusion organelle membrane fusion autophagy vesicle organization cellular component organization organelle fusion organelle organization autophagosome-lysosome fusion metabolic process cellular component organization or biogenesis vesicle fusion process utilizing autophagic mechanism regulation of cellular component organization autophagosome organization cellular component biogenesis cellular component assembly autophagosome assembly organelle assembly vacuole organization regulation of autophagosome assembly regulation of vacuole organization regulation of cellular component biogenesis regulation of organelle organization regulation of organelle assembly import into cell endocytosis response to stimulus immune response negative regulation of response to stimulus negative regulation of immune response regulation of response to stimulus negative regulation of immune system process immune system process regulation of immune response regulation of immune system process cellular response to stimulus TOR signaling regulation of signaling regulation of TOR signaling signaling regulation of signal transduction intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of cell communication regulation of TORC1 signaling signal transduction TORC1 signaling regulation of protein modification process regulation of protein phosphorylation negative regulation of phosphate metabolic process regulation of primary metabolic process phosphate-containing compound metabolic process negative regulation of protein modification process protein metabolic process protein modification process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process protein phosphorylation phosphorylation regulation of protein metabolic process negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process negative regulation of protein phosphorylation macromolecule modification regulation of phosphorylation macromolecule metabolic process negative regulation of phosphorylation regulation of metabolic process regulation of cytoskeleton organization regulation of actin filament organization regulation of actin filament-based process actin cytoskeleton organization actin filament organization regulation of actin cytoskeleton organization actin filament-based process regulation of supramolecular fiber organization supramolecular fiber organization cytoskeleton organization positive regulation of autophagy positive regulation of biological process regulation of catabolic process regulation of autophagy positive regulation of catabolic process positive regulation of metabolic process regulation of macroautophagy positive regulation of macroautophagy positive regulation of cellular process regulation of protein localization macromolecule localization intracellular protein localization cellular localization late endosome to lysosome transport establishment of localization in cell vacuolar transport intracellular transport lysosomal transport cytoplasmic stress granule assembly membraneless organelle assembly axon extension multicellular organismal process axonogenesis cellular developmental process developmental growth cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell growth cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development system development developmental process neuron projection extension plasma membrane bounded cell projection organization developmental cell growth growth nervous system development axon development cell morphogenesis involved in neuron differentiation developmental growth involved in morphogenesis generation of neurons anatomical structure morphogenesis neuron development animal gross anatomical part developmental process regulation of synaptic vesicle cycle synaptic vesicle cycle vesicle-mediated transport in synapse	somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle organelle membraneless organelle cytoplasm supramolecular complex somatodendritic compartment cell body cellular anatomical structure perikaryon neuronal cell body intracellular anatomical structure cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule intracellular organelle organelle membraneless organelle cytoplasm supramolecular complex cytoplasmic stress granule growth cone axon cell projection distal axon neuron projection axonal growth cone plasma membrane bounded cell projection site of polarized growth membrane-bounded organelle nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system organelle envelope nuclear envelope organelle membrane cytosol presynapse presynaptic cytosol synapse cell junction dendrite dendritic tree protein-containing complex guanyl-nucleotide exchange factor complex intracellular protein-containing complex lytic vacuole vacuole lysosome main axon glutamatergic synapse autophagosome neuron to neuron synapse hippocampal mossy fiber to CA3 synapse endosome intracellular vesicle cytoplasmic vesicle vesicle autolysosome secondary lysosome P-body postsynapse
A [auth C]	WD repeat-containing protein 41	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity	regulation of localization regulation of cellular process transport negative regulation of biological process negative regulation of transport vesicle-mediated transport localization negative regulation of secretion regulation of secretion by cell secretion by cell negative regulation of exocytosis negative regulation of cellular process negative regulation of secretion by cell regulation of biological process regulation of localization regulation of cellular process transport negative regulation of biological process negative regulation of transport vesicle-mediated transport localization negative regulation of secretion regulation of secretion by cell secretion by cell negative regulation of exocytosis negative regulation of cellular process negative regulation of secretion by cell regulation of biological process regulation of transport secretion biological regulation export from cell regulation of vesicle-mediated transport establishment of localization regulation of secretion exocytosis regulation of exocytosis cellular process catabolic process autophagy metabolic process process utilizing autophagic mechanism response to stimulus immune response negative regulation of response to stimulus negative regulation of immune response regulation of response to stimulus negative regulation of immune system process immune system process regulation of immune response regulation of immune system process regulation of catabolic process regulation of autophagy regulation of metabolic process	vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle lysosomal membrane cytoplasm vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle lysosomal membrane cytoplasm organelle membrane lysosome protein-containing complex guanyl-nucleotide exchange factor complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth B]	IPR037520	Folliculin/SMCR8, longin domain	Domain
C [auth B]	IPR037521	Folliculin/SMCR8, tripartite DENN domain	Domain
B [auth A]	IPR027819	Guanine nucleotide exchange factor C9orf72	Family
A [auth C]	IPR019775	WD40 repeat, conserved site	Conserved Site
A [auth C]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A [auth C]	IPR040102	WD repeat-containing protein 41	Family
A [auth C]	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
A [auth C]	IPR001680	WD40 repeat	Repeat
A [auth C]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth B]	: Q8TEV9	attention deficit hyperactivity disorder, inattentive type osteosarcoma juvenile dermatomyositis ovarian cancer large cell medulloblastoma
B [auth A]	: Q96LT7	amyotrophic lateral sclerosis frontotemporal dementia and/or amyotrophic lateral sclerosis 1 juvenile idiopathic arthritis frontotemporal dementia with motor neuron disease neurodegenerative disease Frontotemporal Lobar Degeneration behavioral variant of frontotemporal dementia inflammatory bowel disease malignant ependymoma oligodendroglioma adrenal cortex carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia amyotrophic lateral sclerosis type 1 aphasia schizoaffective disorder amyotrophic lateral sclerosis frontotemporal dementia and/or amyotrophic lateral sclerosis 1 juvenile idiopathic arthritis frontotemporal dementia with motor neuron disease neurodegenerative disease Frontotemporal Lobar Degeneration behavioral variant of frontotemporal dementia inflammatory bowel disease malignant ependymoma oligodendroglioma adrenal cortex carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia amyotrophic lateral sclerosis type 1 aphasia schizoaffective disorder bipolar disorder sinusitis Crohn disease gastric carcinoma intellectual disability ovarian cancer Alzheimer disease Parkinson disease progressive non-fluent aphasia atypical teratoid rhabdoid tumor schizophrenia brain disease tuberculosis dementia hepatocellular carcinoma pancreatic intraductal papillary-mucinous carcinoma Pick disease semantic dementia breast cancer ulcerative colitis gastric cancer
A [auth C]	: Q9HAD4	adrenal cortex carcinoma Pick disease osteosarcoma ovarian cancer

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.