☰ Navigation Tabs
Complex of IgE and Ligelizumab
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Y7Q 2Y7Q, 4F9P experimental model PDB 4F9P 2Y7Q, 4F9P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.9 287.15 0.2M Na Thiocyanate pH 6.9, 20% PEG3350, 10 mM Spermidine
Crystal Properties Matthews coefficient Solvent content 2.13 42.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.96 α = 90 b = 103.18 β = 90 c = 124.61 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2016-11-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.9787 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.65 47.9 100 0.33 1 8.4 10.9 11282 112.188066571
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.65 3.7 100 0.54 1.3 10.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2Y7Q, 4F9P 3.65029109708 19.954204639 1.35615677935 11142 558 99.9372140999 0.290662214839 0.290414730496 0.2992 0.295281674461 0.3109 113.182185354
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.1670310899 f_angle_d 0.935870061069 f_chiral_restr 0.0503078555906 f_plane_restr 0.00610473704297 f_bond_d 0.00487424343314
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6711 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 111
Software Software Software Name Purpose PHENIX refinement XDS data reduction XSCALE data scaling PHASER phasing