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Structure of the Vesicular Stomatitis Virus L Protein in Complex with Its Phosphoprotein Cofactor (3.0 A resolution)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5A22
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 8.6247 f_angle_d 0.5674 f_chiral_restr 0.0393 f_plane_restr 0.0033 f_bond_d 0.0032
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 83979 Reported Resolution (Å) 3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement and classification were limited to a resolution of 0.4 nm to produce unbiased resolution estimate at final estimate resolution. Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (5A22) Refinement Space REAL Refinement Protocol OTHER Refinement Target CC + restraints Overall B Value 70.6 Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 100
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version CTF CORRECTION CTFFIND 4 MODEL FITTING O 14.0.0 INITIAL EULER ASSIGNMENT FREALIGN X FINAL EULER ASSIGNMENT FREALIGN X CLASSIFICATION FREALIGN X RECONSTRUCTION FREALIGN X MODEL REFINEMENT PHENIX 1.16-3549
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION CTF correction using cisTEM 246825 Resolution limit for picking: 2 nm