6TKD

ChiLob 7/4 H2 HC-C228S F(ab')2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.5293PEG 4000, ammonium sulphate
Crystal Properties
Matthews coefficientSolvent content
3.0559.64

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 148.021α = 90
b = 148.021β = 90
c = 46.139γ = 120
Symmetry
Space GroupP 3 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2016-07-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.976DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9128.1999.20.1090.0470.9969.46.945431
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.940.320.7682.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6FAX1.9128.1945413221498.9670.1740.17260.206427.549
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0170.0090.017-0.056
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.433
r_dihedral_angle_4_deg19.972
r_dihedral_angle_3_deg13.261
r_dihedral_angle_1_deg7.891
r_lrange_it7.046
r_lrange_other6.842
r_scangle_it5.04
r_scangle_other5.039
r_mcangle_it3.71
r_mcangle_other3.709
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.433
r_dihedral_angle_4_deg19.972
r_dihedral_angle_3_deg13.261
r_dihedral_angle_1_deg7.891
r_lrange_it7.046
r_lrange_other6.842
r_scangle_it5.04
r_scangle_other5.039
r_mcangle_it3.71
r_mcangle_other3.709
r_scbond_it3.377
r_scbond_other3.376
r_mcbond_it2.632
r_mcbond_other2.631
r_angle_other_deg2.577
r_angle_refined_deg1.699
r_symmetry_xyhbond_nbd_refined0.263
r_symmetry_nbd_other0.211
r_xyhbond_nbd_refined0.194
r_nbd_refined0.189
r_nbd_other0.184
r_symmetry_nbd_refined0.179
r_nbtor_refined0.164
r_symmetry_nbtor_other0.081
r_chiral_restr0.08
r_bond_other_d0.037
r_gen_planes_other0.012
r_bond_refined_d0.011
r_gen_planes_refined0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3315
Nucleic Acid Atoms
Solvent Atoms401
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing