6FAX

Complex of Human CD40 Ectodomain with Lob 7.4 Fab

  • Classification: IMMUNE SYSTEM
  • Organism(s): Homo sapiens
  • Expression System: Homo sapiens

  • Deposited: 2017-12-18 Released: 2018-02-07 
  • Deposition Author(s): Orr, C.M., Tews, I., Pearson, A.R.
  • Funding Organization(s): German Research Foundation; German Federal Excellence Cluste; Institute for Life Sciences, University of Southampton; Antibody and Vaccine Group,; Cancer Research UK Antibody Programme; European Union 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.185 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Complex Interplay between Epitope Specificity and Isotype Dictates the Biological Activity of Anti-human CD40 Antibodies.

Yu, X.Chan, H.T.C.Orr, C.M.Dadas, O.Booth, S.G.Dahal, L.N.Penfold, C.A.O'Brien, L.Mockridge, C.I.French, R.R.Duriez, P.Douglas, L.R.Pearson, A.R.Cragg, M.S.Tews, I.Glennie, M.J.White, A.L.

(2018) Cancer Cell 33: 664-675.e4


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lob 7.4 light chain
L
214N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Lob 7.4 heavy chain
H
240N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Tumor necrosis factor receptor superfamily member 5
R
173Homo sapiensMutation(s): 0 
Gene Names: CD40 (TNFRSF5)
Find proteins for P25942 (Homo sapiens)
Go to Gene View: CD40
Go to UniProtKB:  P25942
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.185 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 158.753α = 90.00
b = 158.753β = 90.00
c = 93.622γ = 120.00
Software Package:
Software NamePurpose
MOLREPphasing
xia2data reduction
REFMACrefinement
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermany--
German Federal Excellence ClusteGermany--
Institute for Life Sciences, University of SouthamptonUnited Kingdom--
Antibody and Vaccine Group,United Kingdom--
Cancer Research UK Antibody ProgrammeUnited Kingdom--
European Union602262-2

Revision History 

  • Version 1.0: 2018-02-07
    Type: Initial release
  • Version 1.1: 2018-04-04
    Type: Data collection, Database references
  • Version 1.2: 2018-04-18
    Type: Data collection, Database references