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Crystal structure of the amyloid-like TSYVGV segment from the Candida albicans Agglutinin-like protein (Adhesin) 5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 Reservoir contained 0.1 M Na Acet 4.6 pH, 30 %v/v MPD, 0.2 M NaCl
Crystal Properties Matthews coefficient Solvent content 1.47 16.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 11.77 α = 90 b = 9.36 β = 95.08 c = 16.79 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2015-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8729 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 16.72 96.2 0.2 0.204 0.999 13.66 27.09 1178 12.481
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.25 97.9 0.855 0.9 0.842 2.49 9.281
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.2 16.72 1059 118 96.16 0.1082 0.1059 0.105 0.1265 0.1247 RANDOM 8.367
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 0.23 0.54 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 10.747 r_sphericity_bonded 7.866 r_dihedral_angle_3_deg 6.679 r_sphericity_free 5.851 r_rigid_bond_restr 2.056 r_angle_refined_deg 1.545 r_dihedral_angle_1_deg 1.524 r_angle_other_deg 0.644 r_chiral_restr 0.098 r_bond_refined_d 0.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 10.747 r_sphericity_bonded 7.866 r_dihedral_angle_3_deg 6.679 r_sphericity_free 5.851 r_rigid_bond_restr 2.056 r_angle_refined_deg 1.545 r_dihedral_angle_1_deg 1.524 r_angle_other_deg 0.644 r_chiral_restr 0.098 r_bond_refined_d 0.011 r_bond_other_d 0.01 r_gen_planes_refined 0.008 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 44 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction