6RHB

Crystal structure of the amyloid-like IATLYV segment from the Candida albicans Agglutinin-like protein (Adhesin) 5


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293Reservoir contained 0.1M tri-Sodium citrate pH 5.6, 1.0M Ammonium phosphate

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 9.49α = 90
b = 17.87β = 90
c = 22.42γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 2M2015-09-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-20.8729ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.2613.9791.10.2460.2580.9956.811.539107611.103
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.261.3258.80.7570.7950.9712.8910.933

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTbeta strand1.2613.9796810891.110.10020.09970.1039RANDOM4.607
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.330.56-0.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg12.833
r_dihedral_angle_3_deg9.052
r_dihedral_angle_1_deg5.687
r_angle_refined_deg1.56
r_angle_other_deg1.273
r_rigid_bond_restr0.455
r_chiral_restr0.077
r_bond_refined_d0.007
r_bond_other_d0.007
r_gen_planes_refined0.006
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg12.833
r_dihedral_angle_3_deg9.052
r_dihedral_angle_1_deg5.687
r_angle_refined_deg1.56
r_angle_other_deg1.273
r_rigid_bond_restr0.455
r_chiral_restr0.077
r_bond_refined_d0.007
r_bond_other_d0.007
r_gen_planes_refined0.006
r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms48
Nucleic Acid Atoms
Solvent Atoms1
Heterogen Atoms

Software

Software
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction