SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D NOESY | 0.6 mM / DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3') | 90% H2O/10% D2O | 120 mM | 7.0 | 1 atm | 283 | Bruker AVANCE III 850 |
| 2 | 2D NOESY | 0.6 mM / DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3') | 100% D2O | 120 mM | 7.0 | 1 atm | 283 | Bruker AVANCE III 700 |
| 7 | 2D NOESY | 0.6 mM / DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3') | 100% D2O | 120 mM | 7.0 | 1 atm | 283 | Bruker AVANCE III 600 |
| 6 | 2D NOESY | 0.6 mM / DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3') | 90% H2O/10% D2O | 120 mM | 7.0 | 1 atm | 283 | Bruker AVANCE III 950 |
| 3 | 2D TOCSY | 0.6 mM / DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3') | 100% D2O | 120 mM | 7.0 | 1 atm | 283 | Bruker AVANCE III 700 |
| 4 | 2D DQF-COSY | 0.6 mM / DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3') | 100% D2O | 120 mM | 7.0 | 1 atm | 283 | Bruker AVANCE III 850 |
| 5 | 1D 15N-edited HSQC | 0.6 mM / DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3') | 90% H2O/10% D2O | 120 mM | 7.0 | 1 atm | 283 | Agilent DD2 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 700 |
| 5 | Bruker | AVANCE III | 600 |
| 2 | Bruker | AVANCE III | 850 |
| 4 | Bruker | AVANCE III | 950 |
| 3 | Agilent | DD2 | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | Amber | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | Sparky | Goddard | |
| 2 | structure calculation | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
| 3 | processing | VNMR | Varian | |
| 4 | processing | TopSpin | Bruker Biospin | |
| 5 | refinement | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
| 6 | peak picking | Sparky | Goddard | |














