6R14

Structure of kiteplatinated dsDNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-13C HSQC aliphatic1 mM NA- kiteplatin90% H2O/10% D2O100 mM7.01 atm273Bruker AVANCE III 600
22D 1H-1H NOESY1 mM NA- kiteplatin90% H2O/10% D2O100 mM7.01 atm273Bruker AVANCE III 950
32D DQF-COSY1 mM NA- kiteplatin90% H2O/10% D2O100 mM7.01 atm298Bruker AVANCE III 850
52D 1H-1H TOCSY1 mM NA- kiteplatin90% H2O/10% D2O100 mM7.01 atm298Bruker AVANCE III 850
42D 1H-15N HSQC1 mM NA- kiteplatin90% H2O/10% D2O100 mM7.01 atm298Bruker AVANCE III 850
62D 1H-1H NOESY1 mM NA- kiteplatin90% H2O/10% D2O100 mM7.01 atm298Bruker AVANCE III 950
72D 1H-15N HSQC1 mM NA- kiteplatin90% H2O/10% D2O100 mM7.01 atm273Bruker AVANCE III 850
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
2BrukerAVANCE III850
3BrukerAVANCE III950
NMR Refinement
MethodDetailsSoftware
simulated annealingnovel force-field for kitePtAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2structure calculationAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
3chemical shift assignmentSparkyGoddard
4peak pickingSparkyGoddard