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Crystal structures of the recombinant beta-Factor XIIa protease with bound Thr-Arg and Pro-Arg substrate mimetics
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 292 0.1 M sodium citrate, pH 5.6 with 10% PEG 4000 and 0.15 M MgCl2
Crystal Properties Matthews coefficient Solvent content 3.8 67.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.45 α = 90 b = 131.45 β = 90 c = 238.35 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 PIXEL DECTRIS PILATUS 6M-F 2013-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4 115.11 94.8 3.8 2.5 17015
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 4 4.01
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4 115.11 15371 1708 93.09 0.3031 0.2971 0.2977 0.35644 0.3533 RANDOM 38.322
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 0.1 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.088 r_dihedral_angle_4_deg 22.3 r_dihedral_angle_3_deg 20.252 r_dihedral_angle_1_deg 6.055 r_long_range_B_refined 4.006 r_long_range_B_other 4.005 r_angle_other_deg 3.882 r_mcangle_it 1.997 r_mcangle_other 1.996 r_scangle_other 1.519
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.088 r_dihedral_angle_4_deg 22.3 r_dihedral_angle_3_deg 20.252 r_dihedral_angle_1_deg 6.055 r_long_range_B_refined 4.006 r_long_range_B_other 4.005 r_angle_other_deg 3.882 r_mcangle_it 1.997 r_mcangle_other 1.996 r_scangle_other 1.519 r_angle_refined_deg 1.471 r_scbond_it 1.421 r_scbond_other 1.421 r_mcbond_it 1.064 r_mcbond_other 1.064 r_chiral_restr 0.091 r_gen_planes_other 0.03 r_gen_planes_refined 0.016 r_bond_refined_d 0.011 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9347 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 148
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing