6N5M

Crystal structure of ABIN-1 UBAN in complex with one M1-linked di-ubiquitin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.129820% PEG 3350, 0.2 M Ammonium acetate
Crystal Properties
Matthews coefficientSolvent content
2.3246.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.008α = 90
b = 62.109β = 90
c = 123.791γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102009-10-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12A1.00Photon FactoryAR-NW12A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.0161.91006.76.56818
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.013.09

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.0161.9539426883.050.241220.23940.27756RANDOM49.123
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.551.061.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.869
r_dihedral_angle_3_deg15.884
r_dihedral_angle_4_deg14.023
r_dihedral_angle_1_deg5.66
r_long_range_B_refined3.708
r_long_range_B_other3.708
r_mcangle_it2.067
r_mcangle_other2.067
r_scangle_other2.034
r_mcbond_it1.254
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.869
r_dihedral_angle_3_deg15.884
r_dihedral_angle_4_deg14.023
r_dihedral_angle_1_deg5.66
r_long_range_B_refined3.708
r_long_range_B_other3.708
r_mcangle_it2.067
r_mcangle_other2.067
r_scangle_other2.034
r_mcbond_it1.254
r_mcbond_other1.249
r_angle_refined_deg1.236
r_scbond_it1.161
r_scbond_other1.161
r_angle_other_deg0.931
r_chiral_restr0.063
r_bond_refined_d0.007
r_bond_other_d0.003
r_gen_planes_refined0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2255
Nucleic Acid Atoms
Solvent Atoms22
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing