☰ Navigation Tabs
Application of anti-helix antibodies in protein structure determination (9011-3LRH)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LRH 3LRH, 2W73 experimental model PDB 2W73 3LRH, 2W73
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 296 50% PEG 400,
0.2M CaCl2,
0.1M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.3 46.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.298 α = 90 b = 115.298 β = 90 c = 93.275 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 CCD ADSC QUANTUM 315r 2016-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.979 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.7 0.043 27.3 5.1 33481
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 0.26
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3LRH, 2W73 1.95 27.38 31710 1712 99.27 0.20441 0.20266 0.2077 0.2365 0.2209 RANDOM 36.547
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 -0.21 -0.41 1.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.326 r_dihedral_angle_4_deg 15.859 r_dihedral_angle_3_deg 13.363 r_long_range_B_refined 8.723 r_long_range_B_other 8.445 r_scangle_other 6.957 r_dihedral_angle_1_deg 5.941 r_scbond_it 4.695 r_scbond_other 4.694 r_mcangle_it 4.661
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.326 r_dihedral_angle_4_deg 15.859 r_dihedral_angle_3_deg 13.363 r_long_range_B_refined 8.723 r_long_range_B_other 8.445 r_scangle_other 6.957 r_dihedral_angle_1_deg 5.941 r_scbond_it 4.695 r_scbond_other 4.694 r_mcangle_it 4.661 r_mcangle_other 4.66 r_mcbond_it 3.438 r_mcbond_other 3.436 r_angle_refined_deg 1.505 r_angle_other_deg 1.47 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2904 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing