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Crystal Structure of Human BCMA in complex with UniAb(TM) VH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZHK 3zhk, 4zfo experimental model PDB 4ZFO 3zhk, 4zfo
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 293 0.2M sodium malonate pH 4.0 and 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.38 48.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.392 α = 90 b = 73.806 β = 90 c = 133.491 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.95 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.59 48.99 99.8 0.077 0.083 0.032 0.998 11.6 6.6 10364
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.59 2.7 99.4 0.268 0.289 0.108 0.977 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3zhk, 4zfo 2.6 48.99 9739 514 99.77 0.2118 0.2085 0.2129 0.2713 0.273 RANDOM 55.386
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.68 0.9 1.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.997 r_dihedral_angle_3_deg 20.844 r_dihedral_angle_4_deg 17.815 r_dihedral_angle_1_deg 7.555 r_angle_refined_deg 1.35 r_angle_other_deg 0.868 r_chiral_restr 0.063 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.997 r_dihedral_angle_3_deg 20.844 r_dihedral_angle_4_deg 17.815 r_dihedral_angle_1_deg 7.555 r_angle_refined_deg 1.35 r_angle_other_deg 0.868 r_chiral_restr 0.063 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2311 Nucleic Acid Atoms Solvent Atoms 34 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction pointless data scaling PHASER phasing