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Structure of LmbA2991T421A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2NLZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.1M Tris pH 8.0, 28%(w/v) Polyethylene glycol 4000
Crystal Properties Matthews coefficient Solvent content 2.57 52.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.352 α = 90 b = 113.209 β = 90 c = 116.756 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NFPSS BEAMLINE BL19U1 0.9785 NFPSS BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 100 13.8 10.6 45004
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2NLZ 2.5 50 42570 2261 99.65 0.21592 0.21386 0.25507 0.2401 RANDOM 24.672
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.74 -2.98 5.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.807 r_dihedral_angle_3_deg 20.48 r_dihedral_angle_4_deg 18.579 r_dihedral_angle_1_deg 6.77 r_long_range_B_refined 2.502 r_long_range_B_other 2.495 r_angle_refined_deg 1.419 r_mcangle_it 1.305 r_mcangle_other 1.305 r_scangle_other 1.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.807 r_dihedral_angle_3_deg 20.48 r_dihedral_angle_4_deg 18.579 r_dihedral_angle_1_deg 6.77 r_long_range_B_refined 2.502 r_long_range_B_other 2.495 r_angle_refined_deg 1.419 r_mcangle_it 1.305 r_mcangle_other 1.305 r_scangle_other 1.15 r_angle_other_deg 1.014 r_mcbond_it 0.746 r_mcbond_other 0.746 r_scbond_it 0.657 r_scbond_other 0.657 r_chiral_restr 0.078 r_bond_refined_d 0.008 r_bond_other_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8595 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing