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Human AURKC INCENP complex bound to VX-680
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6GR8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 20 % PEG3350, 10 % ethylene glycol, 0.1 M bis-tris-propane pH 7.5, 0.2 M sodium sulfate
Crystal Properties Matthews coefficient Solvent content 2.95 58.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.617 α = 90 b = 82.617 β = 90 c = 121 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 R CdTe 300K 2014-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 71.55 100 0.07 0.999 14.8 5.2 23264
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.32 100 0.689 2 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6GR8 2.25 71.55 22049 1177 99.9 0.18379 0.18165 0.1876 0.22443 0.2261 RANDOM 44.179
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 -0.19 -0.38 1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.256 r_dihedral_angle_4_deg 23.903 r_dihedral_angle_3_deg 16.685 r_long_range_B_refined 7.643 r_long_range_B_other 7.557 r_dihedral_angle_1_deg 6.465 r_scangle_other 5.648 r_mcangle_it 4.499 r_mcangle_other 4.498 r_scbond_it 3.548
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.256 r_dihedral_angle_4_deg 23.903 r_dihedral_angle_3_deg 16.685 r_long_range_B_refined 7.643 r_long_range_B_other 7.557 r_dihedral_angle_1_deg 6.465 r_scangle_other 5.648 r_mcangle_it 4.499 r_mcangle_other 4.498 r_scbond_it 3.548 r_scbond_other 3.533 r_mcbond_other 2.97 r_mcbond_it 2.969 r_angle_refined_deg 1.329 r_angle_other_deg 0.824 r_chiral_restr 0.062 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2605 Nucleic Acid Atoms Solvent Atoms 162 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing