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Human AURKC INCENP complex bound to BRD-7880
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4AF3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 0.2 M sodium chloride, 25% PEG3350, 0.1 M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.11 41.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.65 α = 90 b = 72.48 β = 90 c = 83.06 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 R CdTe 300K 2013-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9796 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 56.65 97.1 0.1 0.995 9.8 5.4 34077
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 77.3 0.709 2.1 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4AF3 1.75 54.61 32319 1712 96.71 0.1785 0.17648 0.21626 0.2222 RANDOM 18.932
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.05 2.91 -0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.765 r_dihedral_angle_4_deg 19.839 r_dihedral_angle_3_deg 13.112 r_dihedral_angle_1_deg 6.614 r_long_range_B_refined 5.287 r_long_range_B_other 5.286 r_scangle_other 3.004 r_mcangle_other 2.275 r_mcangle_it 2.272 r_scbond_it 1.844
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.765 r_dihedral_angle_4_deg 19.839 r_dihedral_angle_3_deg 13.112 r_dihedral_angle_1_deg 6.614 r_long_range_B_refined 5.287 r_long_range_B_other 5.286 r_scangle_other 3.004 r_mcangle_other 2.275 r_mcangle_it 2.272 r_scbond_it 1.844 r_scbond_other 1.843 r_mcbond_it 1.397 r_mcbond_other 1.391 r_angle_refined_deg 1.35 r_angle_other_deg 0.894 r_chiral_restr 0.219 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2768 Nucleic Acid Atoms Solvent Atoms 311 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing